Integrative omics framework for characterization of coral reef ecosystems from the Tara Pacific expedition
| Type | : | ACL |
|---|---|---|
| Nature | : | Production scientifique |
| Au bénéfice du Laboratoire | : | Oui |
| Statut de publication | : | Publié |
| Année de publication | : | 2023 |
| Auteurs (52) | : | BELSER Caroline POULAIN Julie LABADIE Karine GAVORY Frédérick ALBERTI Adriana GUY Julie CARRADEC Quentin CRUAUD Corinne DA SILVA Corinne ENGELEN Stefan MIELLE P PERDEREAU Aude SAMSON Gaëlle GAS Shahinaz VOOLSTRAA Christian,r GALAND Pierre,e FLORES J,michel HUME Benjamin,c,c PERNA G ZIEGLER M RUSCHEWEYH Hans-joachim BOISSIN Emilie ROMAC Sarah BOURDIN Guillaume IWANKOW Guillaume MOULIN Clémentine GARCÍA D,a,p AGOSTINI Sylvain BANAIGS Bernard BOSS Emmanuel BOWLER Chris DE VARGAS Colomban DOUVILLE Eric FORCIOLI Didier FURLA P GILSON Eric LOMBARD Fabien PESANT Stéphane REYNAUD S SUNAGAWA Shinichi THOMAS Olivier,p TROUBLÉ Romain THURBER Rebecca,vega ZOCCOLA Didier SCARPELLI C JACOBY E,k OLIVEIRA Pedro,h AURY Jean-marc ALLEMAND Denis PLANES S WINCKER Patrick TEAM GENOSCOPE, TECH |
| Revue scientifique | : | Scientific Data |
| Volume | : | 10 |
| Fascicule | : | 1 |
| Pages | : | |
| DOI | : | 10.1038/s41597-023-02204-0 |
| URL | : | https://www.nature.com/articles/s41597-023-02204-0 |
| Abstract | : | Coral reef science is a fast-growing field propelled by the need to better understand coral health and resilience to devise strategies to slow reef loss resulting from environmental stresses. Key to coral resilience are the symbiotic interactions established within a complex holobiont, i.e. the multipartite assemblages comprising the coral host organism, endosymbiotic dinoflagellates, bacteria, archaea, fungi, and viruses. Tara Pacific is an ambitious project built upon the experience of previous Tara Oceans expeditions, and leveraging state-of-the-art sequencing technologies and analyses to dissect the biodiversity and biocomplexity of the coral holobiont screened across most archipelagos spread throughout the entire Pacific Ocean. Here we detail the Tara Pacific workflow for multi-omics data generation, from sample handling to nucleotide sequence data generation and deposition. This unique multidimensional framework also includes a large amount of concomitant metadata collected side-by-side that provide new assessments of coral reef biodiversity including micro-biodiversity and shape future investigations of coral reef dynamics and their fate in the Anthropocene. |
| Mots-clés | : | - |
| Commentaire | : | - |
| Tags | : | - |
| Fichier attaché | : | - |
| Citation | : |
Belser C, Poulain J, Labadie K, Gavory F, Alberti A, Guy J, Carradec Q, Cruaud C, Da Silva C, Engelen S, Mielle P, Perdereau A, Samson G, Gas S, Voolstraa CR, Galand PE, Flores JM, Hume BCC, Perna G, Ziegler M, Ruscheweyh H-J, Boissin E, Romac S, Bourdin G, Iwankow G, Moulin C, García DAP, Agostini S, Banaigs B, Boss E, Bowler C, De Vargas C, Douville E, Forcioli D, Furla P, Gilson E, Lombard F, Pesant S, Reynaud S, Sunagawa S, Thomas OP, Troublé R, Thurber RV, Zoccola D, Scarpelli C, Jacoby EK, Oliveira PH, Aury J-M, Allemand D, Planes S, Wincker P, Team Genoscope, Tech (2023) Integrative omics framework for characterization of coral reef ecosystems from the Tara Pacific expedition. Sci Data 10 | doi: 10.1038/s41597-023-02204-0
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