First release of the European marine omics biodiversity observation network (EMO BON) shotgun metagenomics data from water and sediment samples
| Type | : | ACL |
|---|---|---|
| Nature | : | Production scientifique |
| Au bénéfice du Laboratoire | : | Oui |
| Statut de publication | : | Publié |
| Année de publication | : | 2025 |
| Auteurs (56) | : | PAVLOUDI Christina SANTI Ioulia AZUA I BAÑA Zuriñe BASTIANINI Mauro BELSER Caroline BILBAO Jone BITZ-THORSEN Julie BROUDIN Caroline CAMUSAT Mathieu CANCIO Ibon CARAY-COUNIL Louis CASOTTI R CASTEL J COMTET T COX Cymon j DAGUIN Claire DÍAZ DE CERIO Oihane EXTER Katrina FAUVELOT Cecile FRADA Miguel,j. GALAND Pierre,e GARCZAREK Laurence GONZÁLEZ FERNÁNDEZ Jose GUILLOU Laure HABLÜTZEL Pascal,i HEYNDERICKX Hanneloor HOUBIN Céline KERVELLA Anne-emmanuelle KRYSTALLAS Apostolos LAGAISSE Rune LAROQUETTE Arnaud LESCURE Lyvia LOPES Eva LOULAKAKI Melina LOURO Bruno MAGALHÃES Catarina MAIDANOU Maria MARGIOTTA Francesca MONTRESOR Marina NOT Fabrice PAREDES Estefanía PERCOPO Isabella PERU Erwan POULAIN Julie PRÆBEL Kim RIGAUT-JALABERT Fabienne ROMAC Sarah STAVROULAKI Melanthia SOUZA TRONCOSO Jesús THIÉBAUT Eric THOMAS Wilfried TKACZ Andrzej TRANO Anna chiara WINCKER Patrick PADE Nicolas |
| Revue scientifique | : | Biodiversity Data Journal |
| Volume | : | 13 |
| Fascicule | : | |
| Pages | : | |
| DOI | : | 10.3897/BDJ.13.e143585 |
| URL | : | https://doi.org/10.3897/BDJ.13.e143585 |
| Abstract | : | The European Marine Omics Biodiversity Observation Network (EMO BON) is an initiative of the European Marine Biological Resource Centre (EMBRC) to establish a persistent genomic observatory amongst designated European coastal marine sites, sharing the same protocols for sampling and data curation. Environmental samples are collected from the water column and, at some sites, soft sediments and hard substrates (Autonomous Reef Monitoring Structures - ARMS), together with a set of mandatory and discretionary metadata (including Essential Ocean Variables - EOVs). Samples are collected following standardised protocols at regular and specified intervals and sequenced in large six-monthly batches at a centralised sequencing facility. The use of standard operating procedures (SOPs) during data collection, library preparation and sequencing aims to provide uniformity amongst the data collected from the sites. Coupled with strict adherence to open and FAIR (Findable, Accessible, Interoperable, Reusable) data principles, this ensures maximum comparability amongst samples and enhances reusability and interoperability of the data with other data sources. The observatory network was launched in June 2021, when the first sampling campaign took place. |
| Mots-clés | : | - |
| Commentaire | : | - |
| Tags | : | - |
| Fichier attaché | : | - |
| Citation | : |
Pavloudi C, Santi I, Azua I, Baña Z, Bastianini M, Belser C, Bilbao J, Bitz-Thorsen J, Broudin C, Camusat M, Cancio I, Caray-Counil L, Casotti R, Castel J, Comtet T, Cox C, Daguin C, Díaz de Cerio O, Exter K, Fauvelot C, Frada MJ, Galand PE, Garczarek L, González Fernández J, Guillou L, Hablützel PI, Heynderickx H, Houbin C, Kervella A-E, Krystallas A, Lagaisse R, Laroquette A, Lescure L, Lopes E, Loulakaki M, Louro B, Magalhães C, Maidanou M, Margiotta F, Montresor M, Not F, Paredes E, Percopo I, Peru E, Poulain J, Præbel K, Rigaut-Jalabert F, Romac S, Stavroulaki M, Souza Troncoso J, Thiébaut E, Thomas W, Tkacz A, Trano A, Wincker P, Pade N (2025) First release of the European marine omics biodiversity observation network (EMO BON) shotgun metagenomics data from water and sediment samples. Biodivers Data J 13 | doi: 10.3897/BDJ.13.e143585
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