LOMBARD Fabien
Références (155)
ACL
Meriguet Z, Oddone A, Le Guen D, Pollina T, Bazile R, Moulin C, Troublé R, Prakash M, De Vargas C, Lombard F (2022) Basin-Scale Underway Quantitative Survey of Surface Microplankton Using Affordable Collection and Imaging Tools Deployed From Tara. Front Mar Sci 9 | doi: 10.3389/fmars.2022.916025
ACL
De Vargas C, Le Bescot N, Pollina T, Henry N, Romac S, Colin S, Haentjens N, Carmichael M, Berger C, Le Guen D, Decelle J, Mahé F, Poulain J, Malpot E, Beaumont C, Hardy M, Guiffant D, Probert I, Gruber DF, Allen AE, Gorsky G, Follows MJ, Pochon X, Cael BB, Lombard F, Boss E, Prakash M, Team T, Bazile R, Bourdin G, Casati R, Larson A, Le bescot N, Mirambeau G, Moulin C, Oddone A, Prazuck C, Raimbault V, Trellu C, Troublé R, Cael BB, Guiffant D (2022) Plankton Planet: A frugal, cooperative measure of aquatic life at the planetary scale. Front Mar Sci 9 | doi: 10.3389/fmars.2022.936972
ACL
Llopis Monferrer N, Biard T, Sandin M, Lombard F, Picheral M, Elineau A, Guidi L, Leynaert A, Tréguer P, Not F (2022) Siliceous Rhizaria abundances and diversity in the Mediterranean Sea assessed by combined imaging and metabarcoding approaches. Front Mar Sci 9 | doi: 10.3389/fmars.2022.895995
ACL
Denvil-Sommer A, Buitenhuis ET, Kiko R, Lombard F, Guidi L, Le Quéré C (2022) Testing the reconstruction of modelled particulate organic carbon from surface ecosystem components using PlankTOM12 and Machine Learning. Geosci Model Dev Discuss 2022 | doi: 10.5194/gmd-2022-224
ACL
Richter DJ, Watteaux R, Vannier T, Leconte J, Frémont P, Reygondeau G, Maillet N, Henry N, Benoit G, Da Silva O, Delmont TO, Fernandez-Guerra A, Suweis S, Narci R, Berney C, Eveillard D, Gavory F, Guidi L, Labadie K, Mahieu E, Poulain J, Romac S, Roux S, Dimier C, Kandels S, Picheral M, Searson S, Coordinators T-O, Pesant S, Aury J-M, Brum JR, Lemaitre C, Pelletier E, Bork P, Sunagawa S, Lombard F, Karp-Boss L, Bowler C, Sullivan M, Karsenti E, Mariadassou M, Probert I, Peterlongo P, Wincker P, De Vargas C, Ribera d'Alcalà M, Iudicone D, Jaillon O (2022) Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems. eLife 11 | doi: 10.7554/eLife.78129
ACL
Drago L, Panaiotis T, Irisson J-O, Babin M, Biard T, Carlotti F, Coppola L, Guidi L, Hauss H, Karp-Boss L, Lombard F, McDonnell AMP, Picheral M, Rogge A, Waite A, Stemmann L, Kiko R (2022) Global Distribution of Zooplankton Biomass Estimated by In Situ Imaging and Machine Learning. Front Mar Sci 9 | doi: 10.3389/fmars.2022.894372
ACL
Martin-Cabrera P, Perez Perez R, Irisson J-O, Lombard F, Ove Möller K, Rühl S, Créach V, Lindh M, Stemmann L, Schepers L (2022) Establishing Plankton Imagery Dataflows Towards International Biodiversity Data Aggregators. BISS 6 | doi: 10.3897/biss.6.94196
ACL
Orenstein E, Ayata S-D, Maps F, Becker ÉC, Benedetti F, Biard T, De Garidel-Thoron T, Ellen JS, Ferrario F, Giering SLC, Guy-Haim T, Hoebeke L, Iversen MH, Kiørboe T, Lalonde J-F, Lana A, Laviale M, Lombard F, Lorimer T, Martini S, Meyer A, Möller KO, Niehoff B, Ohman MD, Pradalier C, Romagnan J-B, Schröder S-M, Sonnet V, Sosik HM, Stemmann L, Stock M, Terbiyik-Kurt T, Valcárcel-Pérez N, Vilgrain L, Wacquet G, Waite A, Irisson J-O (2022) Machine learning techniques to characterize functional traits of plankton from image data. Limnol Oceanogr 67: 1647-1669 | doi: 10.1002/lno.12101
ACL
Da Silva O, Ayata S-D, Ser-Giacomi E, Leconte J, Pelletier E, Fauvelot C, Madoui M-A, Guidi L, Lombard F, Bittner L (2022) Genomic differentiation of three pico-phytoplankton species in the Mediterranean Sea. Environ Microbiol | doi: 10.1111/1462-2920.16171
ACL
Koski M, Lombard F (2022) Functional responses of aggregate-colonizing copepods. Limnol Oceanogr | doi: 10.1002/lno.12187
ACL
Abreu A, Bourgois E, Gristwood A, Troublé R, Acinas SG, Bork P, Boss E, Bowler C, Budinich M, Chaffron S, De Vargas C, Delmont TO, Eveillard D, Guidi L, Iudicone D, Kandels S, Morlon H, Lombard F, Pepperkok R, Karlusich JJP, Piganeau G, Régimbeau A, Sommeria-Klein G, Stemmann L, Sullivan MB, Sunagawa S, Wincker P, Zablocki O, Arendt D, Bilic J, Finn R, Heard E, Rouse B, Vamathevan J, Casotti R, Cancio I, Cunliffe M, Kervella A-E, Kooistra WH, Obst M, Pade N, Power DM, Santi I, Tsagaraki TM, Vanaverbeke J, Foundation Tara Ocean , Oceans T, (EMBL) E , (EMBRC-ERIC) E (2022) Priorities for ocean microbiome research. Nat Microbiol 7: 937-947 | doi: 10.1038/s41564-022-01145-5
ACL
Kiko R, Picheral M, Antoine D, Babin M, Berline L, Biard T, Boss E, Brandt P, Carlotti F, Christiansen S, Coppola L, De la Cruz L, Diamond Riquier E, Durrieu de Madron X, Elineau A, Gorsky G, Guidi L, Hauss H, Irisson J-O, Karp-Boss L, Karstensen J, Kim D-G, Lekanoff RM, Lombard F, Lopes RM, Marec C, McDonnell AMP, Niemeyer D, Noyon M, O'Daly SH, Ohman M, Pretty JL, Rogge A, Searson S, Shibata M, Tanaka Y, Tanhua T, Taucher J, Trudnowska E, Turner JS, Waite A, Stemmann L (2022) A global marine particle size distribution dataset obtained with the Underwater Vision Profiler 5. ESSD 2022: 4315-4337 | doi: 10.5194/essd-14-4315-2022
ACL
Karlusich JJP, Lombard F, Irisson J-O, Bowler C, Foster RA (2022) Coupling Imaging and Omics in Plankton Surveys: State-of-the-Art, Challenges, and Future Directions. Front Mar Sci 9 | doi: 10.3389/fmars.2022.878803
ACL
Pedrotti M-L, Lombard F, Baudena A, Galgani F, Elineau A, Petit S, Henry M, Troublé R, Reverdin G, Ser-Giacomi E, Kedzierski M, Boss E, Gorsky G (2022) An integrative assessment of the plastic debris load in the Mediterranean Sea. Sci Total Environ 838 | doi: 10.1016/j.scitotenv.2022.155958
ACL
Cordier T, Angeles IB, Henry N, Lejzerowicz F, Berney C, Morard R, Brandt A, Cambon-Bonavita M-A, Guidi L, Lombard F, Arbizu PM, Massana R, Orejas C, Poulain J, Smith CR, Wincker P, Arnaud-Haond S, Gooday AJ, De Vargas C, Pawlowski J (2022) Patterns of eukaryotic diversity from the surface to the deep-ocean sediment. Sci Adv 8 | doi: 10.1126/sciadv.abj9309
ACL
Karlusich JJP, Pelletier E, Zinger L, Lombard F, Zingone A, Colin S, Gasol JM, Dorrell RG, Henry N, Scalco E, Acinas SG, Wincker P, De Vargas C, Bowler C (2022) A robust approach to estimate relative phytoplankton cell abundances from metagenomes. Mol Ecol Resour | doi: 10.1111/1755-0998.13592
ACL
Picheral M, Catalano C, Brousseau D, Claustre H, Coppola L, Leymarie E, Coindat J, Dias F, Fevre S, Guidi L, Irisson J-O, Legendre L, Lombard F, Mortier L, Penkerc'h C, Rogge A, Schmechtig C, Thibault S, Tixier T, Waite A, Stemmann L (2022) The Underwater Vision Profiler 6: an imaging sensor of particle size spectra and plankton, for autonomous and cabled platforms. Limnol Oceanogr-meth 20: 115-129 | doi: 10.1002/lom3.10475
ACL
Soviadan DY, Benedetti F, Brandão MC, Ayata S-D, Irisson J-O, Jamet J-L, Kiko R, Lombard F, Gnandi K, Stemmann L (2022) Patterns of mesozooplankton community composition and vertical fluxes in the global ocean. Prog Oceanogr 200 | doi: 10.1016/j.pocean.2021.102717
AP
Martin-Cabrera P, Perez Perez R, Irisson J-O, Lombard F, Möller KO, Rühl S, Créach V, Lindh M, Stemmann L, Schepers L (2022) Best practices and recommendations for plankton imaging data management: Ensuring effective data flow towards European data infrastructures. Ostend, Belgium, Flanders Marine Institute, 31 https://repository.oceanbestpractices.org/handle/11329/1917 | doi: 10.25607/OBP-1742